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feature_types() returns different types of gene and genome features. For feature type definitions, see ?feature_type_definitions.

Usage

feature_types()

Value

A character vector of feature types' names.

Examples

feature_types()
#>  [1] "gene"                                 
#>  [2] "protein coding gene"                  
#>  [3] "gene segment"                         
#>  [4] "unclassified gene"                    
#>  [5] "heritable phenotypic marker"          
#>  [6] "other feature types"                  
#>  [7] "QTL"                                  
#>  [8] "transgene"                            
#>  [9] "non-coding RNA gene"                  
#> [10] "lncRNA gene"                          
#> [11] "antisense lncRNA gene"                
#> [12] "lincRNA gene"                         
#> [13] "sense intronic lncRNA gene"           
#> [14] "sense overlapping lncRNA gene"        
#> [15] "bidirectional promoter lncRNA gene"   
#> [16] "rRNA gene"                            
#> [17] "tRNA gene"                            
#> [18] "snRNA gene"                           
#> [19] "snoRNA gene"                          
#> [20] "miRNA gene"                           
#> [21] "scRNA gene"                           
#> [22] "SRP RNA gene"                         
#> [23] "RNase P RNA gene"                     
#> [24] "RNase MRP RNA gene"                   
#> [25] "telomerase RNA gene"                  
#> [26] "unclassified non-coding RNA gene"     
#> [27] "ribozyme gene"                        
#> [28] "complex/cluster/region"               
#> [29] "cytogenetic marker"                   
#> [30] "chromosomal deletion"                 
#> [31] "insertion"                            
#> [32] "chromosomal inversion"                
#> [33] "Robertsonian fusion"                  
#> [34] "reciprocal chromosomal translocation" 
#> [35] "chromosomal translocation"            
#> [36] "chromosomal duplication"              
#> [37] "chromosomal transposition"            
#> [38] "unclassified cytogenetic marker"      
#> [39] "BAC/YAC end"                          
#> [40] "BAC end"                              
#> [41] "YAC end"                              
#> [42] "PAC end"                              
#> [43] "other genome feature"                 
#> [44] "retrotransposon"                      
#> [45] "telomere"                             
#> [46] "minisatellite"                        
#> [47] "unclassified other genome feature"    
#> [48] "endogenous retroviral region"         
#> [49] "mutation defined region"              
#> [50] "CpG island"                           
#> [51] "promoter"                             
#> [52] "promoter flanking region"             
#> [53] "TSS region"                           
#> [54] "enhancer"                             
#> [55] "CTCF binding site"                    
#> [56] "transcription factor binding site"    
#> [57] "open chromatin region"                
#> [58] "DNA segment"                          
#> [59] "pseudogenic region"                   
#> [60] "pseudogene"                           
#> [61] "pseudogenic gene segment"             
#> [62] "polymorphic pseudogene"               
#> [63] "imprinting control region"            
#> [64] "intronic regulatory region"           
#> [65] "silencer"                             
#> [66] "locus control region"                 
#> [67] "insulator"                            
#> [68] "response element"                     
#> [69] "origin of replication"                
#> [70] "transcriptional cis regulatory region"
#> [71] "TSS cluster"