Changelog • mgi.report.reader

mgi.report.reader 0.1.3

Added marker_type_definitions data set.
Renamed update_marker_symbol() to symbol_to_symbol().
Renamed convert_to_marker_id() to symbol_to_identifier().
symbol_to_symbol() and symbol_to_identifier() use data table backend with keyed column for improved look-up performance.
Mappings from symbols to symbols/identifiers is backed up by memoised functions making interactive experience a bit nicer.
Added bundled tiny examples of MRK_List1.rpt, accessible with report_example(), for examples and unit tests.
Renamed open_marker_in_mgi() to open_marker_id_in_mgi(), and added open_marker_symbol_in_mgi().

CRAN release: 2024-07-05

Fix a bug in create_symbol_mapping() and create_id_mapping() regarding the removal of rows that appear more than once, but that are effectively the same mapping.

Fix a bug in create_symbol_mapping() and create_id_mapping() regarding the removal of rows that appear more than once, i.e. rows that correspond to unresolvable mappings.

Extensive documentation for supported MGI reports.
More flexible interface for read_report().
Report data is now accompanied by attributes providing report last modification date and source: report_last_modified() and report_source().
Marker crosswalks from old symbols: update_marker_symbol() and convert_to_marker_id().
New helper to quickly browse information about an MGI marker: open_marker_in_mgi().

CRAN release: 2024-06-28