Get details about an Ensembl identifier

This function retrieves information about one or more Ensembl identifiers. Ensembl identifiers for which information is available are: genes, exons, transcripts and proteins.

Usage

get_id(id, verbose = FALSE, warnings = TRUE, progress_bar = TRUE)

Arguments

id: A character vector of Ensembl identifiers. Ensembl identifiers have the form ENS[species prefix][feature type prefix][a unique eleven digit number]. id should not contain NAs. Please note that while 'ENSG00000157764' is a valid identifier as a query, 'ENSG00000157764.13' is not.
verbose: Whether to be verbose about the http requests and respective responses' status.
warnings: Whether to show warnings.
progress_bar: Whether to show a progress bar.

Value

A tibble of 9 variables:

id: Ensembl identifier.
id_latest: Ensembl identifier including the version suffix.
type: Entity type: gene ('Gene'), exon ('Exon'), transcript ('Transcript'), and protein ('Translation').
id_version: Ensembl identifier version, indicates how many times that entity has changed during its time in Ensembl.
release: Ensembl release version.
is_current: Is this the latest identifier for the represented entity.
genome_assembly_name: Code name of the genome assembly.
peptide: TODO
possible_replacement: TODO

Examples

get_id(c('ENSDARE00000830915', 'ENSG00000248378', 'ENSDART00000033574', 'ENSP00000000233'))
#> # A tibble: 0 × 9
#> # ℹ 9 variables: id <chr>, id_latest <chr>, type <chr>, id_version <int>,
#> #   release <int>, is_current <lgl>, genome_assembly_name <chr>, peptide <chr>,
#> #   possible_replacement <list>